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Growth phase diets diminish histone acetyltransferase Gcn5 function and shorten lifespan of Drosophila males.
Shoko Mizutani, Kanji Furuya, Ayumi Mure, Yuuki Takahashi, Akihiro Mori, Nozomu Sakurai, Takuto Suito, Kohjiro Nagao, Masato Umeda, Kaori Watanabe, Yukako Hattori, and Tadashi Uemura.
EMBO Rep. DOI：https://doi.org/10.1038/s44319-025-00503-8
Misclassification in memory modification in AppNL-G-F knock-in mouse model of Alzheimer’s disease
Mei-Lun Huang, Yusuke Suzuki, Hiroki Sasaguri, Takashi Saito, Takaomi C Saido,
Itaru Imayoshi.
eLife DOI：https://doi.org/10.7554/eLife.105347
A nuclear CobW/WW-domain factor represses the CO₂-concentrating mechanism in the green alga Chlamydomonas reinhardtii
Daisuke Shimamura, Junko Yasuda, Yosuke Yamahara, Hirofumi Nakano, Shin-Ichiro Ozawa, Ryutaro Tokutsu, Ayumi Yamagami, Tomonao Matsushita, Yuichiro Takahashi, Takeshi Nakano, Hideya Fukuzawa,
Takashi Yamano.
Proc. Natl. Acad. Sci. USA DOI：https://doi.org/10.1073/pnas.2518136123
Roles of a Drosophila ADAM 10 Transmembrane Metalloprotease, Kuzbanian, in Tissue Architecture and Function of the Adult Adipose Tissue
Yusaku Hayashi, Taiichi Tsuyama, Tadao Usui, Takumi Ohbayashi, Takefumi Kondo, Kumiko Kokuryoh, Tomonari Awaya, Tatsuya Katsuno, Tadashi Uemura
Gen to Cells DOI：https://doi.org/10.1111/gtc.70084
SimHS-AFMfit-MD: An Integrative Approach for Inferring Alpha-Actinin Atomic Conformational Dynamics
Kien Xuan Ngo, Takashi Sumikama, Rémi Vuillemot, Han Gia Nguyen, Ngan Thi Phuong Le, Sergei Grudinin
Nano Letters DOI：https://doi.org/10.1021/acs.nanolett.6c00617
Kazuhiro Kobayashi, Kouki Kawakami, Toshiki E. Matsui, Shun Yokoi, Masahiro Fukuda, Tomohiro J. Narita, Hiroki Arai, Mai Tambo, Takashi Sumikama, Manae Tatsumi, Keitaro Yamashita, Junki Koyanagi, Mai Kugawa, Hisako Ikeda, Ayumi Sumino, Ayori Mitsutake, Bri an K. Kobilka, Asuka Inoue, Hideaki E. Kato
Nature DOI：https://www.nature.com/articles/s41586-026-10228-w
Alternative stable states of microbiome structure and soil ecosystem functions.
Hiroaki Fujita, Shigenobu Yoshida, Kenta Suzuki, Hirokazu Toju.
Environmental Microbiome. DOI: https://doi.org/10.1186/s40793-025-00688-4
Periplasmic carbonic anhydrase CAH1 contributes to high inorganic carbon affinity in Chlamydomonas reinhardtii.
Daisuke Shimamura, Tomoaki Ikeuchi, Ami Matsuda, Yoshinori Tsuji, Hideya Fukuzawa, Keiichi Mochida, Takashi Yamano.
Plant Physiology. DOI: https://doi.org/10.1093/plphys/kiae463
Cytoplasmic fluidization contributes to breaking spore dormancy in fission yeast.
Keiichiro Sakai, Yohei Kondo, Yuhei Goto, Kazuhiro Aoki.
Proceedings of the National Academy of Sciences. DOI: https://doi.org/10.1073/pnas.2405553121
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo.
Nature Plants. DOI: 10.1038/s41477-024-01669-0
A multicolor suite for deciphering population coding of calcium and cAMP in vivo
Tatsushi Yokoyama, Satoshi Manita, Hiroyuki Uwamori, Mio Tajiri, Itaru Imayoshi, Sho Yagishita, Masanori Murayama, Kazuo Kitamura, Masayuki Sakamoto.
Nature Methods. DOI: https://doi.org/10.1038/s41592-024-02222-9
Interaction network rewiring and species’ contributions to community-scale flexibility.
Hirokazu Toju, Sayaka S. Suzuki, and Yuki G. Baba
PNAS Nexus. DOI: https://doi.org/10.1093/pnasnexus/pgae047
Deterministic and stochastic processes generating alternative states of microbiomes.
Ibuki Hayashi, Hiroaki Fujita, and Hirokazu Toju.
ISME Communications. DOI: https://doi.org/10.1093/ismeco/ycae007
Conserved CKI1-mediated signaling is required for female germline specification in Marchantia polymorpha.
Haonan Bao, Rui Sun, Megumi Iwano, Yoshihiro Yoshitake, Shiori S. Aki, Masaaki Umeda, Ryuichi Nishihama, Shohei Yamaoka, Takayuki Kohchi.
Current Biology. DOI: https://doi.org/10.1016/j.cub.2024.01.013
Identification of core yeast species and microbe-microbe interactions impacting larval growth of Drosophila in the wild.
Ayumi Mure, Yuki Sugiura, Rae Maeda, Kohei Honda, Nozomu Sakurai, Yuuki Takahashi Masayoshi Watada, Toshihiko Katoh, Aina Gotoh, Yasuhiro Gotoh, Itsuki Taniguchi, Keiji Nakamura, Tetsuya Hayashi, Takane Katayama, Tadashi Uemura, and Yukako Hattori.
eLife. DOI: https://doi.org/10.7554/eLife.90148.3
Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha.
Rui Sun, Maiko Okabe, Sho Miyazaki, Toshiaki Ishida, Kiyoshi Mashiguchi, Keisuke Inoue, Yoshihiro Yoshitake, Shohei Yamaoka, Ryuichi Nishihama, Hiroshi Kawaide, Masatoshi Nakajima, Shinjiro Yamaguchi, Takayuki Kohchi.
The Plant Cell. DOI: 10.1093/plcell/koad216
Red fluorescent proteins engineered from green fluorescent proteins
Hiromi Imamura, Shiho Otsubo, Mizuho Nishida, Norihiro Takekawa, Katsumi Imada
PNAS. DOI: https://doi.org/10.1073/pnas.2307687120
A bHLH heterodimer regulates germ cell differentiation in land plant gametophytes.
Misaki Saito, Ryosuke Momiki, Kazuo Ebine, Yoshihiro Yoshitake, Ryuichi Nishihama, Takuya Miyakawa, Takeshi Nakano, Nobutaka Mitsuda, Takashi Araki, Takayuki Kohchi, Shohei Yamaoka
Current Biology. DOI: https://doi.org/10.1016/j.cub.2023.09.020
Belly roll, a GPI-anchored Ly6 protein, regulates Drosophila melanogaster escape behaviors by modulating the excitability of nociceptive peptidergic interneurons.
Kai Li, Yuma Tsukasa, Misato Kurio, Kaho Maeta, Akimitsu Tsumadori, Shumpei Baba, Risa Nishimura, Akira Murakami, Koun Onodera, Takako Morimoto, Tadashi Uemura, Tadao Usui.
eLife. DOI: https://doi.org/10.7554/eLife.83856
Dynamic de novo adipose tissue development during metamorphosis in Drosophila melanogaster.
Taiichi Tsuyama, Yusaku Hayashi, Hanae Komai, Kohei Shimono, Tadashi Uemura.
Development. DOI: https://doi-org.kyoto-u.idm.oclc.org/10.1242/dev.200815
Inter-organ Wingless/Ror/Akt signaling regulates nutrient-dependent hyperarborization of somatosensory neurons.
Yasutetsu Kanaoka, Koun Onodera, Kaori Watanabe, Yusaku Hayashi, Tadao Usui, Tadashi Uemura, Yukako Hattori.
eLife. DOI: https://doi.org/10.7554/eLife.79461
Medium-chain fatty acids suppress lipotoxicity-induced hepatic fibrosis via the immunomodulating receptor GPR84.
Ryuji Ohue-Kitano, Hazuki Nonaka, Akari Nishida, Yuki Masujima, Daisuke Takahashi, Takako Ikeda, Akiharu Uwamizu, Miyako Tanaka, Motoyuki Kohjima, Miki Igarashi, Hironori Katoh, Tomohiro Tanaka, Asuka Inoue, Takayoshi Suganami, Koji Hase, Yoshihiro Ogawa, Junken Aoki, Ikuo Kimura.
JCI Insight. DOI: 10.1172/jci.insight.165469
Circadian clock does not play an essential role in daylength measurement for growth-phase transition in Marchantia polymorpha.
Yuki Kanesaka, Keisuke Inoue, Yuki Tomita, Shohei Yamaoka, and Takashi Araki.
Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2023.1275503