A multicolor suite for deciphering population coding of calcium and cAMP in vivo
Tatsushi Yokoyama, Satoshi Manita, Hiroyuki Uwamori, Mio Tajiri, Itaru Imayoshi, Sho Yagishita, Masanori Murayama, Kazuo Kitamura, Masayuki Sakamoto.
Nature Methods. DOI: https://doi.org/10.1038/s41592-024-02222-9


Interaction network rewiring and species’ contributions to community-scale flexibility.
Hirokazu Toju, Sayaka S. Suzuki, and Yuki G. Baba
PNAS Nexus. DOI: https://doi.org/10.1093/pnasnexus/pgae047


Deterministic and stochastic processes generating alternative states of microbiomes.
Ibuki Hayashi, Hiroaki Fujita, and Hirokazu Toju.
ISME Communications. DOI: https://doi.org/10.1093/ismeco/ycae007


Conserved CKI1-mediated signaling is required for female germline specification in Marchantia polymorpha.
Haonan Bao, Rui Sun, Megumi Iwano, Yoshihiro Yoshitake, Shiori S. Aki, Masaaki Umeda, Ryuichi Nishihama, Shohei Yamaoka, Takayuki Kohchi.
Current Biology. DOI: https://doi.org/10.1016/j.cub.2024.01.013


Identification of core yeast species and microbe-microbe interactions impacting larval growth of Drosophila in the wild.
Ayumi Mure, Yuki Sugiura, Rae Maeda, Kohei Honda, Nozomu Sakurai, Yuuki Takahashi Masayoshi Watada, Toshihiko Katoh, Aina Gotoh, Yasuhiro Gotoh, Itsuki Taniguchi, Keiji Nakamura, Tetsuya Hayashi, Takane Katayama, Tadashi Uemura, and Yukako Hattori.
eLife. DOI: https://doi.org/10.7554/eLife.90148.3


Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha.
Rui Sun, Maiko Okabe, Sho Miyazaki, Toshiaki Ishida, Kiyoshi Mashiguchi, Keisuke Inoue, Yoshihiro Yoshitake, Shohei Yamaoka, Ryuichi Nishihama, Hiroshi Kawaide, Masatoshi Nakajima, Shinjiro Yamaguchi, Takayuki Kohchi.
The Plant Cell.  DOI: 10.1093/plcell/koad216


Red fluorescent proteins engineered from green fluorescent proteins
Hiromi Imamura, Shiho Otsubo, Mizuho Nishida, Norihiro Takekawa, Katsumi Imada
PNAS. DOI: https://doi.org/10.1073/pnas.2307687120


A bHLH heterodimer regulates germ cell differentiation in land plant gametophytes.
Misaki Saito, Ryosuke Momiki, Kazuo Ebine, Yoshihiro Yoshitake, Ryuichi Nishihama, Takuya Miyakawa, Takeshi Nakano, Nobutaka Mitsuda, Takashi Araki, Takayuki Kohchi, Shohei Yamaoka
Current Biology. DOI: https://doi.org/10.1016/j.cub.2023.09.020


Belly roll, a GPI-anchored Ly6 protein, regulates Drosophila melanogaster escape behaviors by modulating the excitability of nociceptive peptidergic interneurons.
Kai Li, Yuma Tsukasa, Misato Kurio, Kaho Maeta, Akimitsu Tsumadori, Shumpei Baba, Risa Nishimura, Akira Murakami, Koun Onodera, Takako Morimoto, Tadashi Uemura, Tadao Usui.
eLife. DOI: https://doi.org/10.7554/eLife.83856


Dynamic de novo adipose tissue development during metamorphosis in Drosophila melanogaster.
Taiichi Tsuyama, Yusaku Hayashi, Hanae Komai, Kohei Shimono, Tadashi Uemura.
Development. DOI: https://doi-org.kyoto-u.idm.oclc.org/10.1242/dev.200815


Inter-organ Wingless/Ror/Akt signaling regulates nutrient-dependent hyperarborization of somatosensory neurons.
Yasutetsu Kanaoka, Koun Onodera, Kaori Watanabe, Yusaku Hayashi, Tadao Usui, Tadashi Uemura, Yukako Hattori.
eLife. DOI: https://doi.org/10.7554/eLife.79461


Medium-chain fatty acids suppress lipotoxicity-induced hepatic fibrosis via the immunomodulating receptor GPR84.
Ryuji Ohue-Kitano, Hazuki Nonaka, Akari Nishida, Yuki Masujima, Daisuke Takahashi, Takako Ikeda, Akiharu Uwamizu, Miyako Tanaka, Motoyuki Kohjima, Miki Igarashi, Hironori Katoh, Tomohiro Tanaka, Asuka Inoue, Takayoshi Suganami, Koji Hase, Yoshihiro Ogawa, Junken Aoki, Ikuo Kimura.
JCI Insight. DOI: 10.1172/jci.insight.165469


Circadian clock does not play an essential role in daylength measurement for growth-phase transition in Marchantia polymorpha.
Yuki Kanesaka, Keisuke Inoue, Yuki Tomita, Shohei Yamaoka, and Takashi Araki.
Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2023.1275503